CNP0024446.0

[17-acetyl-8,14,17-trihydroxy-3-[4-methoxy-5-[4-methoxy-5-[4-methoxy-6-methyl-5-[3,4,5-trihydroxy-6-(hydroxymethyl)tetrahydropyran-2-yl]oxy-tetrahydropyran-2-yl]oxy-6-methyl-tetrahydropyran-2-yl]oxy-6-methyl-tetrahydropyran-2-yl]oxy-10,13-dimethyl-1,2,3,4,7,9,11,12,15,16-decahydrocyclopenta[a]phenanthren-12-yl] 3,4-dimethylpent-2-enoate

Created on · Last update on

NPLikeness
NP Likeness Score: The likelihood of the compound to be a natural product, ranges from -5 (less likely) to 5 (very likely).
2.19
Annotation Level
★ ★ ☆ ☆ ☆
Mol. Weight
1084.58181
Mol. Formula
C55H88O21

Representations

Molecular details

COCONUT id
CNP0024446.0
Name
-
IUPAC name
[17-acetyl-8,14,17-trihydroxy-3-[4-methoxy-5-[4-methoxy-5-[4-methoxy-6-methyl-5-[3,4,5-trihydroxy-6-(hydroxymethyl)tetrahydropyran-2-yl]oxy-tetrahydropyran-2-yl]oxy-6-methyl-tetrahydropyran-2-yl]oxy-6-methyl-tetrahydropyran-2-yl]oxy-10,13-dimethyl-1,2,3,4,7,9,11,12,15,16-decahydrocyclopenta[a]phenanthren-12-yl] 3,4-dimethylpent-2-enoate
InChI
InChI=1S/C55H88O21/c1-26(2)27(3)19-40(58)73-39-24-38-51(8)15-14-33(20-32(51)13-16-54(38,63)55(64)18-17-53(62,31(7)57)52(39,55)9)71-41-21-34(65-10)47(28(4)68-41)74-42-22-35(66-11)48(29(5)69-42)75-43-23-36(67-12)49(30(6)70-43)76-50-46(61)45(60)44(59)37(25-56)72-50/h13,19,26,28-30,33-39,41-50,56,59-64H,14-18,20-25H2,1-12H3
InChIKey
IVRMIASBKXXYNR-UHFFFAOYSA-N
Canonical SMILES (RDKit)
COC1CC(OC2CCC3(C)C(=CCC4(O)C3CC(OC(=O)C=C(C)C(C)C)C3(C)C(O)(C(C)=O)CCC43O)C2)OC(C)C1OC1CC(OC)C(OC2CC(OC)C(OC3OC(CO)C(O)C(O)C3O)C(C)O2)C(C)O1
Murcko Framework
O1CCCCC1OC2COC(OC3COC(OC4COC(OC5CC6=CCC7C(CCC8CCCC87)C6CC5)CC4)CC3)CC2
Synonyms
  • (1R,2R,5S,10S,11R,14S,15S,16R)-14-acetyl-10,11,14-trihydroxy-5-{[(2R,4S,5R,6R)-4-methoxy-5-{[(2S,4S,5R,6R)-4-methoxy-5-{[(2S,4R,5R,6R)-4-methoxy-6-methyl-5-{[(2S,3R,4S,5S,6R)-3,4,5-trihydroxy-6-(hydroxymethyl)oxan-2-yl]oxy}oxan-2-yl]oxy}-6-methyloxan-2-yl

Chemical classification

NP Classification

References

Citations

No citations

Collections

Supernatural3

SuperNatural 3.0 is a freely accessible database of natural products and their derivatives, offering a comprehensive resource for researchers and professionals in various fields. Natural products, which are chemical compounds produced by living organisms, have been integral to medicine and healing for millennia and continue to be a crucial source of potential therapeutic agents. The database provides detailed structural and physicochemical information on a vast array of natural compounds, along with data on pathways, mechanisms of action, toxicity, and vendor information where available. SuperNatural 3.0 also includes predictions for drug-like chemical spaces targeting specific diseases and body systems, enhancing its utility in drug discovery efforts. Additionally, the database incorporates predictions for potential sweetness profiles of compounds, addressing the growing demand for natural food ingredients. This valuable resource is available without any registration requirements, facilitating easy access for users worldwide via the provided web address. License: No Licensing information (Cite paper).

10.71606/coconut.cnpc0063

NPASS

The NPASS natural product activity and species source database has been updated with significant enhancements to support drug discovery, medicinal plant research, and microbial investigations. This update expands the database's coverage of natural products (NPs), their activities against specific targets, and their composition in various species. The database now includes new data on composition and concentration values of NPs in different species, as well as extended information on NP activities against various targets. NPASS has also broadened its species source data, incorporating new types such as co-cultured and engineered microbes. Additionally, the update introduces estimated activity profiles for NPs without experimental data, utilizing the Chemical Checker tool. To further aid researchers, the database now provides computed drug-likeness properties and ADMET (absorption, distribution, metabolism, excretion, and toxicity) information for all NPs. These comprehensive updates make NPASS an even more valuable resource for researchers in the fields of natural product discovery and medicinal research. The updated version of NPASS is freely accessible online, promoting open access to this crucial scientific data. License: No Licensing information (Cite paper)

10.71606/coconut.cnpc0030

Super Natural II

Super Natural II is a comprehensive natural product database that serves as a valuable resource for drug discovery and development. This updated version significantly expands upon its predecessor, offering a vast collection of natural compounds along with their structural and physicochemical properties. The database facilitates the exploration of topological pharmacophore patterns shared between natural products and commercial drugs, contributing to a deeper understanding of their potential therapeutic applications. Super Natural II provides users with advanced search capabilities, including template-based similarity searches and substructure queries. Additionally, it offers predicted toxicity information for many compounds and includes vendor details for easy sourcing. The database also integrates pathway information related to the synthesis and degradation of natural products, as well as insights into their mechanisms of action compared to structurally similar drugs and their target proteins. By consolidating this wealth of information into a freely accessible platform, Super Natural II addresses the challenges of scattered or restricted natural product data, supporting researchers in their quest for novel drug candidates inspired by nature. License: No Licensing information (Cite paper)

10.71606/coconut.cnpc0044

Stereochemical Variants

Molecular Properties

  • Mol. Formula : C55H88O21
  • Mol. Weight 1084.58181
  • Total atom number : 164
  • Heavy atom number : 76
  • Aromatic Ring Count : 0
  • Rotatable Bond count : 16
  • Minimal number of rings : 8
  • Formal Charge : 164
  • Contains Sugar : True
  • Contains Ring Sugars : True
  • Contains Linear Sugars : False

Molecular Descriptors

  • NP-likeness scores : 2.19
  • Alogp : 2.41
  • TopoPSA : 286.51
  • Fsp3 : 0.89
  • Hydrogen Bond Acceptor Count : 21
  • Hydrogen Bond Donor Count : 7
  • Lipinski Hydrogen Bond Acceptor Count : 21
  • Lipinski Hydrogen Bond Donor Count : 7
  • Lipinski RO5 Violations : 3
2D
3D Structure (by RDKit) Interactive JSmol molecular viewer 3D
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