CNP0153886.0

6-[4-(5,7-dihydroxy-4-oxo-chromen-2-yl)-2,5-dihydroxy-phenoxy]-3,4,5-trihydroxy-tetrahydropyran-2-carboxylic acid

Created on · Last update on

NPLikeness
NP Likeness Score: The likelihood of the compound to be a natural product, ranges from -5 (less likely) to 5 (very likely).
2.03
Annotation Level
★ ☆ ☆ ☆ ☆
Mol. Weight
478.07474
Mol. Formula
C21H18O13

Representations

Molecular details

COCONUT id
CNP0153886.0
Name
-
IUPAC name
6-[4-(5,7-dihydroxy-4-oxo-chromen-2-yl)-2,5-dihydroxy-phenoxy]-3,4,5-trihydroxy-tetrahydropyran-2-carboxylic acid
InChI
InChI=1S/C21H18O13/c22-6-1-10(25)15-11(26)5-12(32-14(15)2-6)7-3-9(24)13(4-8(7)23)33-21-18(29)16(27)17(28)19(34-21)20(30)31/h1-5,16-19,21-25,27-29H,(H,30,31)
InChIKey
RWFFSMNHMCPJTQ-UHFFFAOYSA-N
Canonical SMILES (RDKit)
O=C(O)C1OC(OC2=CC(O)=C(C3=CC(=O)C4=C(O)C=C(O)C=C4O3)C=C2O)C(O)C(O)C1O
Murcko Framework
O1c2ccccc2CC=C1c3ccc(OC4OCCCC4)cc3

Chemical classification

NP Classification

References

Citations

No citations

Collections

KNApSaCK

KNApSAcK-3D is a database that expands on the original KNApSAcK metabolite database by incorporating 3D structural information. The 3D structures were meticulously generated using computational methods, ensuring their accuracy and potential for further research. These structures provide a valuable resource for researchers to investigate potential interactions between metabolites and proteins, estimate biological activities, and potentially uncover novel insights in various fields of study. The database is accessible through the KNApSAcK Family website.

10.71606/coconut.cnpc0023

ZINC NP

Subset of Natural Products from ZINC 15 database.

10.71606/coconut.cnpc0052

UNPD (Universal Natural Products Database)

The Universal Natural Products Database provides a comprehensive collection of natural product structures, their reported biological activities, and virtual screening results. This database offers valuable insights into the chemical diversity and potential pharmaceutical applications of natural compounds. Analysis reveals significant overlap between natural products and FDA-approved drugs in chemical space, suggesting a wealth of potential lead compounds for drug discovery. The database also highlights the polypharmacology of natural products, with many compounds demonstrating interactions with multiple target proteins. To complement existing experimental data, high-throughput virtual screening was conducted against a wide range of target proteins associated with FDA-approved drugs. This approach enabled predictions of the most promising natural products for drug discovery and their potential therapeutic indications. Overall, the Natural Products Database demonstrates that natural compounds possess vast chemical diversity, favourable drug-like properties, and the ability to interact with multiple cellular targets, making them a rich source for pharmaceutical research and development. License: No Licensing information (Cite paper)

10.71606/coconut.cnpc0050

NPEdia

RIKEN Natural Products Encyclopedia (RIKEN NPEdia) is a comprehensive natural products database developed as part of the RIKEN Natural Products Depository (RIKEN NPDepo) chemical resource bank. This database primarily catalogs secondary metabolites isolated from diverse organisms such as actinomycetes, fungi, and plants. Each entry in NPEdia provides detailed information including molecular structure, origin, and various properties of the compounds. The database offers functionality for searching compounds, registering new data, and facilitating a compound-order system. Future plans include integrating metabolites with metabolic pathway maps, protein-protein interaction maps, and chemical genomics maps. NPEdia aims to serve as a valuable resource for researchers across various fields, offering a user-friendly interface and comprehensive information. For the most up-to-date information and details about NPEdia, interested parties can visit the official website. License: No Licensing information (Cite paper)

10.71606/coconut.cnpc0033

Super Natural II

Super Natural II is a comprehensive natural product database that serves as a valuable resource for drug discovery and development. This updated version significantly expands upon its predecessor, offering a vast collection of natural compounds along with their structural and physicochemical properties. The database facilitates the exploration of topological pharmacophore patterns shared between natural products and commercial drugs, contributing to a deeper understanding of their potential therapeutic applications. Super Natural II provides users with advanced search capabilities, including template-based similarity searches and substructure queries. Additionally, it offers predicted toxicity information for many compounds and includes vendor details for easy sourcing. The database also integrates pathway information related to the synthesis and degradation of natural products, as well as insights into their mechanisms of action compared to structurally similar drugs and their target proteins. By consolidating this wealth of information into a freely accessible platform, Super Natural II addresses the challenges of scattered or restricted natural product data, supporting researchers in their quest for novel drug candidates inspired by nature. License: No Licensing information (Cite paper)

10.71606/coconut.cnpc0044

Stereochemical Variants

Molecular Properties

  • Mol. Formula : C21H18O13
  • Mol. Weight 478.07474
  • Total atom number : 52
  • Heavy atom number : 34
  • Aromatic Ring Count : 3
  • Rotatable Bond count : 4
  • Minimal number of rings : 4
  • Formal Charge : 52
  • Contains Sugar : True
  • Contains Ring Sugars : True
  • Contains Linear Sugars : False

Molecular Descriptors

  • NP-likeness scores : 2.03
  • Alogp : -0.45
  • TopoPSA : 227.58
  • Fsp3 : 0.24
  • Hydrogen Bond Acceptor Count : 12
  • Hydrogen Bond Donor Count : 8
  • Lipinski Hydrogen Bond Acceptor Count : 12
  • Lipinski Hydrogen Bond Donor Count : 8
  • Lipinski RO5 Violations : 2
2D
3D Structure (by RDKit) Interactive JSmol molecular viewer 3D
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